PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129574.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 393aa    MW: 44978.2 Da    PI: 5.8088
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.42.6e-2575154286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li++rrem+  ++++k++k+lWee+s+kmre+gf rsp +C++kw+nl k++kk ++ ++      s ++++++++e
  XP_009129574.1  75 WVQDETRILIALRREMDGLFNTSKSNKHLWEEISSKMREKGFDRSPAMCTDKWRNLLKEFKKAAKDQQV-----SGKMSHYKEIE 154
                     **************************************************************9988775.....34556777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-564136IPR009057Homeodomain-like
PROSITE profilePS500908.74667131IPR017877Myb-like domain
SMARTSM007173.0E-671133IPR001005SANT/Myb domain
SuperFamilySSF466894.61E-571143IPR009057Homeodomain-like
CDDcd122034.02E-2973137No hitNo description
PfamPF138371.0E-1874155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MFVSSDKPRS PIDFYKDDDD NNNPSSPTSR HINMMIDGDL QPPPHHQHQI LLGDNSSSED  60
HEINTKAPKK RAETWVQDET RILIALRREM DGLFNTSKSN KHLWEEISSK MREKGFDRSP  120
AMCTDKWRNL LKEFKKAAKD QQVSGKMSHY KEIEDLLRER SKKVTTSYKS VTAPSKVDSF  180
MQFTDKGFED TGLSFASVEA NGRPTLNLER QLDHEGHPLA IASADAVTAN GVPPWNWREP  240
AGNGSDGQPF VGKIITVKYG DYTRRVGIDG TAEAIKEAIR SAFRLRTRRA FWLEDEEEVV  300
RSLDRDMPLG NYTLHVDEGI AVRVCHYDES DPLPVHQEEK VFYTEEDYRD FLGRRGWTCL  360
GEFDGGFRNI ESMVRNVDSM DDLQPGVLYR GMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-4069152186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00380DAPTransfer from AT3G25990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129574.10.0PREDICTED: trihelix transcription factor GT-4
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLM4F5J80.0M4F5J8_BRARP; Uncharacterized protein
STRINGBra036354.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein