PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129579.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 305aa    MW: 34368.4 Da    PI: 5.4791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-14135182253
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                     +  GVr++k +g+W+AeIr+p     +  r +lg+++t e+Aa a+ a ++++
  XP_009129579.1 135 KPVGVRQRK-WGKWAAEIRHPI----TkIRTWLGTYDTLEQAADAYAAKKLEF 182
                     678*****9.**********72....36******************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-9135182IPR001471AP2/ERF domain
SMARTSM003803.6E-14135189IPR001471AP2/ERF domain
PROSITE profilePS5103217.583135192IPR001471AP2/ERF domain
PRINTSPR003674.5E-6136147IPR001471AP2/ERF domain
CDDcd000186.52E-19137180No hitNo description
SuperFamilySSF541715.69E-14137182IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-18138182IPR001471AP2/ERF domain
PRINTSPR003674.5E-6158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQLSPKRTCS VVNSCGVFRL SRFEMSEPKK RSSLQAKKPS KNHKRKTFQI NRLPGLSEDL  60
KTMRKLRFVV SDPYATDYSS SEEDETYQTR KRYVCEIDRP FSHATTQSES ESSSCHNDGS  120
KAKTSDVVGR SSVRKPVGVR QRKWGKWAAE IRHPITKIRT WLGTYDTLEQ AADAYAAKKL  180
EFDALSAGVS SVLSENALSD DSASGFNVDF NFSDLQIPDM GCFVDESLIL NACELDFHLP  240
EESDQFLNDM NFIGLERDGP NNLPDYDFSD VEFDLGLVGN TIDNKFNFFD RLATTTTTPL  300
NIACL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.310720.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895732e-62AC189573.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511672.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like isoform X2
SwissprotQ9LUA21e-111EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLA0A3P6AXH30.0A0A3P6AXH3_BRACM; Uncharacterized protein
TrEMBLM4F5K40.0M4F5K4_BRARP; Uncharacterized protein
STRINGBra036360.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-113ERF family protein