PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129736.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 445aa    MW: 48839.8 Da    PI: 8.0339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.4e-08264311455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L +l+P +    +k   Ka +L + ++Y++sLq
  XP_009129736.1 264 SHSLAERVRREKIGERMKLLEDLVPGC----NKVTGKALMLDEIINYVQSLQ 311
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-15258323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-8258315No hitNo description
Gene3DG3DSA:4.10.280.102.0E-15260325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.9260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-5264311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDNELIMNTE LHPPPEIAAH FEQPSCSSPM LNWPLMNSNL SQYSPPQDCF TWEKSTEQQQ  60
KQSIFDSALS SLVSSPTPSN SNFSGGVGGG DGFVIRELIG KLGNVGNSSA TPMSSPPPMM  120
NRTTPLTEFS GDPGFAERAA RFSCFGSQSF NGRTNSSLPV NNNGKIVNSG KLTRVASTPA  180
LNGFVSPMVP AGKFSRKRKS MTKGKSKENP LPTASPAPSF TKTAEEKGGK RRRREDEKED  240
NTKAPEPPKD YIHVRARRGQ ATDSHSLAER VRREKIGERM KLLEDLVPGC NKVTGKALML  300
DEIINYVQSL QRQVEFLSMK LSSVNDTRLD FNVDALVSKD VMIPSSSNRL HEAGLQAESL  360
SHHSYNNNSQ LHTNVSSSNM MLQSPVNSLE TSTLASSFTH LPTLTQFTDS ISQYQMFSQE  420
DLQSIVGMGV AHNPNHESQN MKIEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199SRKRKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886101e-144AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0029451e-144BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056371e-144BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129736.10.0PREDICTED: transcription factor bHLH78-like
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLM4DVZ70.0M4DVZ7_BRARP; Uncharacterized protein
STRINGBra020691.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]