PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129772.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 440aa    MW: 50610.5 Da    PI: 6.3486
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.77e-20185237155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W +eL ++F++a+e L G+e A+Pk+ile m+v g+t+e+v+SHLQk+R+
  XP_009129772.1 185 KRRVVWDNELKKKFLDAMEDL-GPE-AVPKKILERMNVVGMTRENVASHLQKHRM 237
                     689******************.887.****************************7 PP
2Response_reg45.93.2e-16121191108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d++  ++  l++ l+  +y +v+ + +g +a+++l+++   +D+ ++  + + +d ++l++ei++e  +lpii+ +  ++ + +++ +k G
  XP_009129772.1  12 VLVYDEDFQNLISLEKHLQYFQY-KVTICNEGADAMHMLRNHMntFDIAIIEAQNSAVDIFRLISEIASEI-DLPIIITSKDDSVQSVINWMKIG 104
                     7899999****************.***************888888**********************9988.9********************** PP

                     ESEEEESS--HHHHH CS
    Response_reg  94 akdflsKpfdpeelv 108
                     + d+l Kp+ pe+l+
  XP_009129772.1 105 VCDYLIKPIRPEDLR 119
                     ************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.7E-218133IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-219146No hitNo description
SMARTSM004481.5E-610122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.81711126IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-1012119IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.13E-913119No hitNo description
SuperFamilySSF466891.0E-12182241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-19183241IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-19185237IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MLTGKFPEGL RVLVYDEDFQ NLISLEKHLQ YFQYKVTICN EGADAMHMLR NHMNTFDIAI  60
IEAQNSAVDI FRLISEIASE IDLPIIITSK DDSVQSVINW MKIGVCDYLI KPIRPEDLRF  120
IFKHVVKKMQ VGKRVESEEK ATAEKSSSVG DSTIRNPNKR KRSMFIDGQV GEKDQDHVRD  180
STTKKRRVVW DNELKKKFLD AMEDLGPEAV PKKILERMNV VGMTRENVAS HLQKHRMLLN  240
RQKSHNEKDE KKRSLLSPQG GLHSGEGGSN IQFSTQHISN IPHQPFRHHP DGVPVVVSTR  300
NLLMTNQHHL QTSDFTSIEN VEESLIFTEE DAEVSNLAFL FTQKSEEMSL SHLHEPVMAT  360
TMLSNDNQLF PNQQQMMNFH EPSILHTHSF PLSLTPSSFL DQKETIMMMN VDEGLQQWLL  420
NEQEQPNLTD ENRFSSINPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-13181241162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129772.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129772.10.0PREDICTED: putative two-component response regulator-like APRR4
SwissprotQ9FJ163e-92APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLM4DVV80.0M4DVV8_BRARP; Uncharacterized protein
STRINGBra020652.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.17e-88pseudo-response regulator 4