PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129809.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 381aa    MW: 42450.3 Da    PI: 4.9068
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.5e-32198252155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ + Lt++hvkSHLQkYR+
  XP_009129809.1 198 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPILTIYHVKSHLQKYRT 252
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.58E-16196252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-29196254IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-22198252IPR006447Myb domain, plants
PfamPF002493.2E-9200251IPR001005SANT/Myb domain
PfamPF143795.4E-21286332IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MFRSVPPFMS SRQELMNNPV PCQAVSGGNS GGYMFPSPSG FCNVSPLSTH GRASQTQPPV  60
ATTPSDRLAM QDCFLEAQSM NHPLPEFSDP LDEFFDFSDH VPALNPQAES SDVMVGSTVE  120
VHEKSEWQSW ADQLMSVDNG SEPNWSELLG DPSPHNLTPP TPSLDVPRQE VVANQQQHQV  180
VSFEEQLNSS ASGGATTKQR MRWTPELHEA FVEAVNQLGG SERATPKAVL KLLNNPILTI  240
YHVKSHLQKY RTARYKPETS EATGEPQEKK MTSIEDIKSL DMKTSVEITQ ALRLQMEVQK  300
RLHEQLETQR ALQLQIEKQG RYLQMMFEKQ QKLEENKSSS SSKQCNGASA EVEFESGVVT  360
QAGDQTESAV SVSRKRARED E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-27198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-27198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-27198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-27198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-27198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-27198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-27198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-27198256260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.130100.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129809.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129809.10.0PREDICTED: protein PHR1-LIKE 1 isoform X3
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLM4DVS80.0M4DVS8_BRARP; Uncharacterized protein
STRINGBra020622.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]