PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009129908.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 216aa MW: 24321.9 Da PI: 9.4569

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009129908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.3	3.5e-17	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien+s r+ t+ kR+ gilKKA+EL +LC++ v vii s+ XP_009129908.1 10 FIENESSRKATYKKRKRGILKKANELATLCGVPVGVIIDSP 50 8************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.348	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.3E-24	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.34E-27	2	85	No hit	No description
SuperFamily	SSF55455	1.03E-24	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.3E-17	10	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MTRQKVKMAF IENESSRKAT YKKRKRGILK KANELATLCG VPVGVIIDSP YDLTPEVWPS 60 REDMDNVLSQ LQRLPVMDRT KKMLNQESYL KQSISKASET CKKLTKENKE LEMKEVMFDC 120 LSGKTSPSRI EKNDLGGCGN VIEQYLRNLN RRIEILSKND GASSSSVHVV ASTSVAMPIV 180 ELGSSSTAFC DMIRQQQIQS NMNQNVGGLD LNQQQW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:16798889}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009129908.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129908.1	1e-160	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	1e-54	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	M4DVL1	1e-158	M4DVL1_BRARP; Uncharacterized protein
STRING	Bra020555.1-P	1e-159	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	2e-80	M-type_MADS family protein

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]