PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129946.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 429aa    MW: 47265.2 Da    PI: 5.2704
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.42.9e-1399137241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     e+++C+Ck s+Cl++YCeCfa+g++C+  C+C +C+N+ e
  XP_009129946.1  99 EQRRCKCKASRCLRLYCECFASGSYCNG-CNCLKCHNTLE 137
                     7899************************.********976 PP
2TCR50.25.1e-16177216140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k+++gCnCk+s ClkkYCeC++a++ Cse+C+C dCkN e
  XP_009129946.1 177 KHSRGCNCKRSGCLKKYCECYQANVRCSENCRCRDCKNFE 216
                     5899**********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.1E-1398138IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.2299217IPR005172CRC domain
PfamPF036382.8E-10101135IPR005172CRC domain
SMARTSM011141.8E-17177218IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-12180215IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MGISDQDSPR QSDSSVQAAA VEAKMESSNE SAIKQSHPVL DSQDRREEED FPSHPQTPPS  60
SSEKQPSATQ DASHATPPQT LPVHRNQEAE SNDDVTPSEQ RRCKCKASRC LRLYCECFAS  120
GSYCNGCNCL KCHNTLENEA ERQEAIKATL ERNPGAFEPK IGATPQEDVR QLVTLGKHSR  180
GCNCKRSGCL KKYCECYQAN VRCSENCRCR DCKNFEGSDE LDMSGYLDLL QARKIKAASH  240
SVADRGSSAV PPLVQDQTVN YVVRDGDTSL FTVPNNRVVP GSTAPTYRSS QSDTNQLRHA  300
KELCSLLVSK SVEVANKMSD CVLDAGRMDE KPMSPATRAL MCDEEPVTIS EKETSARVRT  360
SQEKEDTGTS SEVYAEQEKQ ILLSFKDHLM QLLNRGSING TNIQKANTDP SRKEPEDEEQ  420
SHGDSSLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3010322014126Protein lin-54 homolog
5fd3_B2e-3010322014126Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129946.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129946.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotF4JY841e-137TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A398AIB20.0A0A398AIB2_BRACM; Uncharacterized protein
STRINGBra020513.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-139Tesmin/TSO1-like CXC domain-containing protein