PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130000.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 289aa    MW: 31721.2 Da    PI: 5.0495
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.13.3e-17131182354
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     ++kr rr+++NR++ArrsRqRK+++++ Le  v++L++ N++L k+l   ++
  XP_009130000.1 131 DVKRIRRMYSNRISARRSRQRKQEQLADLESQVDSLKGVNSTLYKQLIDATQ 182
                     68*****************************************988765555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-14129193IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.358131177IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.34E-12132182No hitNo description
PfamPF001704.3E-14132177IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-12133183No hitNo description
CDDcd147021.53E-17134185No hitNo description
PROSITE patternPS000360136151IPR004827Basic-leucine zipper domain
PfamPF124981.2E-4200278IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDGHTAKDIG MKKSASELAL QELLTKLLSR QESILDTSPL DPSFDLMNWD YTCELRDSLL  60
KSEILTPAGL FIDAQSSICE NLSADSPVSA NKPEAKRAAR GTVSVYTDDH SDEEDAETEA  120
SQSEMTNDPN DVKRIRRMYS NRISARRSRQ RKQEQLADLE SQVDSLKGVN STLYKQLIDA  180
TQQFRSAGTN NRVLKSDVET LRVKVKLAED LIARGSLTSS LNQLLQTHLS PPQHSINSLH  240
YTGNNTSPAI TVHSDQSLFP GITISGQNSS PGLGNVSSEA VSCVSDIWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151RRSRQRK
2145152RRSRQRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.174430.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130000.10.0PREDICTED: basic leucine zipper 9-like
SwissprotQ9FUD31e-166BZIP9_ARATH; Basic leucine zipper 9
TrEMBLM4DVC70.0M4DVC7_BRARP; Uncharacterized protein
STRINGBra020471.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-150basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]