PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130034.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 169aa    MW: 19326.3 Da    PI: 5.7487
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.16.8e-0999151357
            FAR1   3 YneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtrae 57 
                     Y++YA + GF+vrk++ +k+ k++++  +  +vCsk+g r+e+k k   ++ tr+ 
  XP_009130034.1  99 YCKYACNHGFNVRKQRRTKKkKEDNKAARILYVCSKKGVRKESKVK---RSYTRPI 151
                     99************99887747778889999**********99877...4444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-699146IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MENNQLSGQE AIFGGQYGST LQVVSGDSSE EHQKLVEFLV EEDDTSVTES EEEYEIANIE  60
DEVETEGVNA IEANNENEKK DEFSIGMKFS SDETAHIAYC KYACNHGFNV RKQRRTKKKK  120
EDNKAARILY VCSKKGVRKE SKVKRSYTRP ITRLTYRFNL GGGHKNYSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112119QRRTKKKK
2113119RRTKKKK
3113120RRTKKKKE
4114120RTKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130034.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022545086.12e-88protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A397Y7M86e-73A0A397Y7M8_BRACM; Uncharacterized protein
STRINGBra020562.1-P6e-67(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM6200613