PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130117.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 176aa MW: 18601 Da PI: 8.2872

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84.8	2.1e-26	1	134	24	116
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............................. 88 +++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++ ss+s ++++ XP_009130117.1 1 MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStTSTCTISSSSLDHKPllgsspfilgkrvregfggaipagfwsvp 95 9*****************************************99999777522222333332233355677888888888889999999999999 PP TCP 89 ............kaaksaa.kskksqksaasalnlakesra 116 + a+ ++ ++++q++aa + +++r+ XP_009130117.1 96 arpefgqvlsfaAGAPHEMfLQQHQQQEAA--ALFVHQQRQ 134 999999999876444444424444444444..333333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-21	1	124	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.861	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TTSTCTISSS 60 SLDHKPLLGS SPFILGKRVR EGFGGAIPAG FWSVPARPEF GQVLSFAAGA PHEMFLQQHQ 120 QQEAAALFVH QQRQQQGAIG EASAARVGNN LPGHLSLLAS LSGGVPASGR REDDTR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130117.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130117.1	1e-125	PREDICTED: transcription factor TCP7
Swissprot	Q9FMX2	7e-76	TCP7_ARATH; Transcription factor TCP7
TrEMBL	M4EKP9	1e-123	M4EKP9_BRARP; Uncharacterized protein
STRING	Bra029366.1-P	1e-124	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-48	TCP family protein