PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130167.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 223aa    MW: 24833.9 Da    PI: 8.4632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-2080130255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k  r +lg+++ta eAa+a++ a+ +l+g
  XP_009130167.1  80 HYRGVRRRP-WGKYAAEIRDP---NkKGSRLWLGTYDTAVEAARAYDLAAFELRG 130
                     7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-3279138IPR001471AP2/ERF domain
PfamPF008472.6E-1480130IPR001471AP2/ERF domain
SMARTSM003801.6E-3780144IPR001471AP2/ERF domain
PROSITE profilePS5103225.23880138IPR001471AP2/ERF domain
CDDcd000182.68E-3080138No hitNo description
SuperFamilySSF541711.5E-2380140IPR016177DNA-binding domain
PRINTSPR003672.2E-108192IPR001471AP2/ERF domain
PRINTSPR003672.2E-10104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MATKQEALAI EFISQHLLTD FASQDHHLHS ETTPRTIGNH NPKPNSTLNR RKPPLPNLSV  60
SVSSTMKKPE EEDEEEEKRH YRGVRRRPWG KYAAEIRDPN KKGSRLWLGT YDTAVEAARA  120
YDLAAFELRG RKAILNFPLD VRATSESCFV GLGKRKRLKS FVAEEETVPV RVKAEEKESD  180
TTVAEVEAVP LTPSSWKGVW DVGAGDGIFS VPPLTPTSPS SAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2679141466ATERF1
3gcc_A1e-2679141466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.103170.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1712050.0HQ171205.1 Brassica napus ethylene response factor 56 (ERF56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130167.11e-164PREDICTED: ethylene-responsive transcription factor ERF104-like
SwissprotQ9FKG11e-101EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLM4EKK21e-162M4EKK2_BRARP; Uncharacterized protein
STRINGBra029319.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.11e-93ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]