PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130302.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 232aa    MW: 25711.3 Da    PI: 4.6256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk+F +   L  H  +H
  XP_009130302.1 157 FICDVCGKVFGSYQALGGHRTSH 179
                     89********9999998888777 PP
2zf-C2H2157e-05208230123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg+ F +   L  H++tH
  XP_009130302.1 208 HQCGVCGREFESGQALGGHMKTH 230
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.69E-8155230No hitNo description
PROSITE profilePS5015710.408157184IPR007087Zinc finger, C2H2
SMARTSM003550.044157179IPR015880Zinc finger, C2H2-like
PfamPF139125.5E-12157180IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-4204230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-10207231IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138208232IPR007087Zinc finger, C2H2
SMARTSM003550.021208230IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSESASGSTL PSLETSNNET VLIGGPDLKR EDGAHQIKGE RKMIVDEADS TGSGSPLTAV  60
EEAGLILVAM SKGQRPENSQ NWNAIDRLLA TPNGKEEYYE TDLDSDDDNK EVKYKSVAEL  120
LTQNVETLTE DNGEDDEDND ADETNLVTRE KKCKKEFICD VCGKVFGSYQ ALGGHRTSHK  180
CKRLKICDKN DQDRELVPNK KNDQDRRHQC GVCGREFESG QALGGHMKTH YI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130302.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325420.0AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130302.11e-173PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A398ANI41e-171A0A398ANI4_BRACM; Uncharacterized protein
STRINGBra029315.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.13e-29C2H2-like zinc finger protein