PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130343.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 481aa MW: 55795 Da PI: 5.6974

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v XP_009130343.1 6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 79**************************.99***********6345667999********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktLv+y+grap+g +t Wvmheyrl XP_009130343.1 100 W-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 9.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-62	4	160	IPR003441	NAC domain
PROSITE profile	PS51005	60.647	6	160	IPR003441	NAC domain
Pfam	PF02365	7.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MSPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDENECEP SAYGMQVCRD AYALCRVFKK IVIEAKPRDQ HRSYIHAMSN 180 VSGNSSFDPC SDLEISSTTH QVQNAFRPQI GNGRFNSNAS NQNWSQYYGS SYPPFPTPYK 240 VNNEIECSML QHNISLPPLR IENSAVSNYD FYNTSTTHNN NHGVLEDFTF AESNSNHYNN 300 TVGDQVIHVG NYDEPLIVSN NYMNQGYIEE QKIISTFDDN NQDLGFHGDN TNINIDIDDF 360 FSFDMYNEEN VNRVEANKED VNINEAVDSS GFEVVEEEIR VNNHMLISAY QTTKILYHQV 420 VPSHTLKVHI NLINHNVEDR ILFIEEDNDS WVQRAEKITK IKLNLVSLIA QQYYKYLTIF 480 F

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MSPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDENECEP SAYGMQVCRD AYALCRVFKK IVIEAKPRDQ HRSYIHAMSN  180
VSGNSSFDPC SDLEISSTTH QVQNAFRPQI GNGRFNSNAS NQNWSQYYGS SYPPFPTPYK  240
VNNEIECSML QHNISLPPLR IENSAVSNYD FYNTSTTHNN NHGVLEDFTF AESNSNHYNN  300
TVGDQVIHVG NYDEPLIVSN NYMNQGYIEE QKIISTFDDN NQDLGFHGDN TNINIDIDDF  360
FSFDMYNEEN VNRVEANKED VNINEAVDSS GFEVVEEEIR VNNHMLISAY QTTKILYHQV  420
VPSHTLKVHI NLINHNVEDR ILFIEEDNDS WVQRAEKITK IKLNLVSLIA QQYYKYLTIF  480
F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	1	160	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	1	160	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	1	160	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	1	160	12	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-56	1	160	12	165	NAC domain-containing protein 19
4dul_B	4e-56	1	160	12	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130343.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130343.1	0.0	PREDICTED: NAC domain-containing protein 45 isoform X1
Swissprot	A4VCM0	0.0	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	M4ET79	0.0	M4ET79_BRARP; Uncharacterized protein
STRING	Bra032009.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	0.0	NAC domain containing protein 45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]