PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130414.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 390aa MW: 43957.4 Da PI: 6.8464

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130414.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.4	7.6e-34	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl XP_009130414.1 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.227	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	7.8E-21	148	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MYYQNQHQGK SILSSSRMHL ASERHPFLRG GNSPGDSGLI LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD KATPKTIMKV MGIPGLTLYH LKSHLQKYRL SKNLNGQANS GLNKIGMMTM 120 IEEKSPDADE IQSESLSIGP QPNKNSPIGE ALQMQIEVQR RLHEQLERHL QLRIEAQGKY 180 LQSVLEKAQE TLGRQNLSPA GIEAAKVQLS ELVSKVSAEY PNTSFLDPKE FQNLCPQQMQ 240 TAYPQDSCLT SSEGAQKNPK MLGLRTYLGD STSEQKEVIE EPLFQRMELT WNEGLRGNPY 300 LSTMVTDAEQ RVSYSERSPS TLTMGVGMHG HRGHQQGSNE YNKDERFNDK SEDHKLETQS 360 TKTELDLNTH VENCCTTRPK QFDLNGFSWN

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MYYQNQHQGK SILSSSRMHL ASERHPFLRG GNSPGDSGLI LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTIMKV MGIPGLTLYH LKSHLQKYRL SKNLNGQANS GLNKIGMMTM  120
IEEKSPDADE IQSESLSIGP QPNKNSPIGE ALQMQIEVQR RLHEQLERHL QLRIEAQGKY  180
LQSVLEKAQE TLGRQNLSPA GIEAAKVQLS ELVSKVSAEY PNTSFLDPKE FQNLCPQQMQ  240
TAYPQDSCLT SSEGAQKNPK MLGLRTYLGD STSEQKEVIE EPLFQRMELT WNEGLRGNPY  300
LSTMVTDAEQ RVSYSERSPS TLTMGVGMHG HRGHQQGSNE YNKDERFNDK SEDHKLETQS  360
TKTELDLNTH VENCCTTRPK QFDLNGFSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130414.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ222089	0.0	HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130414.1	0.0	PREDICTED: myb-related protein 2 isoform X2
Swissprot	Q9SQQ9	0.0	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A397ZFW9	0.0	A0A397ZFW9_BRACM; Uncharacterized protein
TrEMBL	M4ET22	0.0	M4ET22_BRARP; Uncharacterized protein
STRING	Bra031952.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	0.0	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]