PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130418.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 344aa    MW: 38427.2 Da    PI: 6.5731
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.81e-53201461128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++++yLk+kv + +++   +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ 
  XP_009130418.1  20 LPPGFRFHPTDEEIITHYLKEKVFNVQFTS-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATLSGYWKATGKDKEIFRG 113
                     79*************************999.78***************8888899***************************************9 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     kg lvg+kktLvfy+grapkgekt+Wvmhe+rl
  XP_009130418.1 114 KGCLVGMKKTLVFYRGRAPKGEKTNWVMHEFRL 146
                     *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-6017172IPR003441NAC domain
PROSITE profilePS5100557.40620171IPR003441NAC domain
PfamPF023656.8E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVEEVGAVVN QGGDHEVVDL PPGFRFHPTD EEIITHYLKE KVFNVQFTSA AIGQADLNKN  60
EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATLSGY WKATGKDKEI FRGKGCLVGM  120
KKTLVFYRGR APKGEKTNWV MHEFRLDGIY SYHNLPKSSR DEWVVCRVFH KNAPPPTTIT  180
TTTNQLIRIE SLDNIDHLLD FSSLPPLIDP GFMGQPGPSL SGSGQQNNLK PILHHPPTAA  240
IDNTYFPAHT VNHTYHSVPS SGSGLVYGTG SGNNNNGMIK LEHSLVSVSQ ETGLSSDMNT  300
TATPEICSYT RMVNSAANEA MMDGNKTSYD DDDLGIFWDD YKLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-501817315167NO APICAL MERISTEM PROTEIN
1ut4_B3e-501817315167NO APICAL MERISTEM PROTEIN
1ut7_A3e-501817315167NO APICAL MERISTEM PROTEIN
1ut7_B3e-501817315167NO APICAL MERISTEM PROTEIN
3swm_A4e-501817318170NAC domain-containing protein 19
3swm_B4e-501817318170NAC domain-containing protein 19
3swm_C4e-501817318170NAC domain-containing protein 19
3swm_D4e-501817318170NAC domain-containing protein 19
3swp_A4e-501817318170NAC domain-containing protein 19
3swp_B4e-501817318170NAC domain-containing protein 19
3swp_C4e-501817318170NAC domain-containing protein 19
3swp_D4e-501817318170NAC domain-containing protein 19
4dul_A3e-501817315167NAC domain-containing protein 19
4dul_B3e-501817315167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130418.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130418.10.0PREDICTED: NAC domain-containing protein 92
SwissprotQ9SQQ60.0NAC46_ARATH; NAC domain-containing protein 46
TrEMBLM4ET200.0M4ET20_BRARP; Uncharacterized protein
STRINGBra031950.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.10.0NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]