PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130419.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 353aa    MW: 40566.4 Da    PI: 6.5952
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.3e-53101391128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+ +yL+kkv++ +++l +vi++vdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + + 
  XP_009130419.1  10 LPPGFRFHPTDEELILHYLRKKVSSLPVPL-SVIEDVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVP 103
                     79****************************.99***************988899***************************************99 PP

             NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl
  XP_009130419.1 104 nggVNENIGIKKALVFYRGKPPKGVKTNWIMHEYRL 139
                     6554566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-627184IPR003441NAC domain
PROSITE profilePS5100560.25110184IPR003441NAC domain
PfamPF023657.8E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSLPVPLS VIEDVDIYKS DPWDLPAKAP  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNGGVNEN IGIKKALVFY  120
RGKPPKGVKT NWIMHEYRLA ETLSPKRVDH SSDSQFNSLG DRSLKSREYS MRLDDWVLCR  180
IYKKSHISLS PPHVATDTSN QEHEENDKEP FIVSETLLPN LENNQTLKRQ KSSFSNLLDA  240
TDLTFLTNFL NETPEHHTEQ EFSFMFENFS NPNIYGNPYL DQKLPRLSPP SSETSFIGNK  300
RERMDYAEET TSTSKKMINN FSYNINSIDH LDHSMVQQSS FMNQELDESS SSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-69918416165NO APICAL MERISTEM PROTEIN
1ut4_B2e-69918416165NO APICAL MERISTEM PROTEIN
1ut7_A2e-69918416165NO APICAL MERISTEM PROTEIN
1ut7_B2e-69918416165NO APICAL MERISTEM PROTEIN
4dul_A2e-69918416165NAC domain-containing protein 19
4dul_B2e-69918416165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130419.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747600.0KF974760.1 Brassica napus NAC transcription factor 47-1 (NAC47-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585389.10.0PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 2
SwissprotQ84TD60.0NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A078IIK70.0A0A078IIK7_BRANA; BnaA05g37410D protein
TrEMBLM4ET190.0M4ET19_BRARP; Uncharacterized protein
STRINGBra031949.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.10.0NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]