PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130451.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 231aa MW: 25923.1 Da PI: 4.3284

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.0003	184	224	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 E+ R d+i++a+ L +++P a K + L +A++Y+k L XP_009130451.1 184 EQSRKDKIRTALKILESIVPGA------KgNQALLLLDEAIDYLKLL 224 999******************9......5356667899999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.737	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-5	184	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-6	184	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.50E-4	184	228	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009826	Biological Process	unidimensional cell growth
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MPLDTRQWDL PPKACFEDMA ARFLPDATEL QAHCLQPPPP FKWSLDKESC GKRFSLSDMR 60 SWCAAATPHG GAQKGLMILD QSGNQTRLLQ CPFPLTAEPF KLSEEFDENY GKESEMHEDT 120 EEINALLYSD EEDCESDDEV MSTGHSPYQQ VCNKGVSEEI DAPCKRQKLL DISQEDTGSG 180 LSDEQSRKDK IRTALKILES IVPGAKGNQA LLLLDEAIDY LKLLKQDLNH C

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.4233	8e-64	leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, and flowers. {ECO:0000269\|PubMed:16936072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Involved in stem elongation, probably by regulating a subset of genes involved in this process. {ECO:0000269\|PubMed:16936072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130451.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189207	0.0	AC189207.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007I19, complete sequence.
GenBank	AC232526	0.0	AC232526.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB083J11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130451.1	1e-171	PREDICTED: transcription factor SAC51-like
Refseq	XP_018511717.1	1e-171	PREDICTED: transcription factor SAC51-like
Swissprot	Q9FMF4	2e-82	SAC51_ARATH; Transcription factor SAC51
TrEMBL	M4ESZ2	1e-170	M4ESZ2_BRARP; Uncharacterized protein
STRING	Bra031922.1-P	1e-171	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5546	10	14

Publications ? help Back to Top
Imai A, et al. The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene. Development, 2006. 133(18): p. 3575-85 [PMID:16936072] Imai A,Komura M,Kawano E,Kuwashiro Y,Takahashi T A semi-dominant mutation in the ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana. Plant J., 2008. 56(6): p. 881-90 [PMID:18694459] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]