PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130461.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 482aa    MW: 53092.7 Da    PI: 5.7928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.23.9e-15291338355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++hn+  rrRR++iN+++  L+el+P +      K +Ka++Le A+eY+ksLq
  XP_009130461.1 291 EMHNISQRRRREKINEKMKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 338
                     58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-18286355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.606288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.53E-16291342No hitNo description
PfamPF000102.4E-12291338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-18292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MXXQESEVRV WXFFVRGEDD IVELLWKSGQ VVESSQTQRP PVPPPILRGS GSGGGGGEES  60
APLPPPPPLH SHQQQPSDDQ NLFIGEDEMA SWLLHHPLRE EDQFHSHLFY SGVVSAVSST  120
QPQASVSLTP PQPPAANTVY TPTATERPMG QAIAARRAES VFNFWRLREN IHNTRGRVEA  180
AAAPWVPVVK DSTQVGSSAT PSSSVATATS GVLQAFAVPS LCQRGVETVC EVAGPSSSVV  240
SKTETELLGI ETEAGDDERK RKEREEPADD TEETGEEARG STSRKRSRAA EMHNISQRRR  300
REKINEKMKA LQELIPRCNK TDKASMLEDA IEYVKSLQLQ IQGGMMPMMY TPNMQRFMPS  360
SAMGMMGVNR PPFVPFPGMA LPRPAHMEGL GPPYPPPRYP FPNVQAFDPS RVHLPTPQPD  420
SNQPQFPGYV NPYSQFVGLQ HLQQPPPPPQ LQNQSSSQLS FSQASSSKEP EDQDSGNVLR  480
HF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283300RKRSRAAEMHNISQRRRR
2297302RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130461.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670972.10.0transcription factor bHLH119-like isoform X2
SwissprotQ9SVU71e-140BH056_ARATH; Putative transcription factor bHLH056
TrEMBLM4D3K70.0M4D3K7_BRARP; Uncharacterized protein
STRINGBra011061.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.14e-95bHLH family protein