PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130507.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 261aa MW: 30339.6 Da PI: 10.0836

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130507.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	73	122	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r++h ++Er+RR+++N+ ++ L+ ++P +s++ + a+i e +++Y+k+ XP_009130507.1 73 QRMNHIAVERNRRRQMNHFLSILKAMMPLF---YSRRSDQASIIEGTINYLKK 122 79*************************9...9***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.67E-12	70	128	No hit	No description
SuperFamily	SSF47459	9.68E-16	71	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.678	72	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-10	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-10	73	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-9	78	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MMFQQEYPYD FSLMKTSSIY EVLDYSIAEQ HSHPTENLSS LQAQGGFSQE PPRKKRKRRR 60 TRSEQKIEEK ENQRMNHIAV ERNRRRQMNH FLSILKAMMP LFYSRRSDQA SIIEGTINYL 120 KKQEQLLQSF EAQLKPTKPN QSINILSNFF NFPQYSTATA CASSRHHHNG LAVVANVEVT 180 MVEMHANIKV LTKTRRRLLF KMINEFDSLG LTIFHLNLTT SSNMSLFTFS VKVDEDCRLT 240 TTANEIADAV HEVVSRIHKG H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	RKKRKR
2	53	58	KKRKRR
3	53	59	KKRKRRR
4	54	59	KRKRRR
5	55	59	RKRRR
6	55	60	RKRRRT
7	73	84	RMNHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130507.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018512187.1	0.0	PREDICTED: transcription factor bHLH99
Swissprot	Q9FKQ6	1e-101	BH099_ARATH; Transcription factor bHLH99
TrEMBL	A0A398AJX8	0.0	A0A398AJX8_BRACM; Uncharacterized protein
STRING	Bra031865.1-P	1e-155	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	1e-103	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]