PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130529.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 136aa    MW: 16115.4 Da    PI: 10.5207
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.7e-111878262
                    XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                    k+ +  +rk +N e+ArrsR +K+++++ L+    +L +eN++L ++l     +++   +e
  XP_009130529.1 18 KDERQKKRKKSNPESARRSRMKKQKYLDDLRSQLNQLNTENRELENQLRYVMHHCQGANME 78
                    4556678999***********************************9999999999866655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-91671No hitNo description
SMARTSM003381.7E-111781IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1621965IPR004827Basic-leucine zipper domain
PfamPF001704.1E-81974IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.94E-102172No hitNo description
CDDcd147021.74E-122273No hitNo description
PROSITE patternPS0003602439IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEDRPSNLTG LNVFFPKKDE RQKKRKKSNP ESARRSRMKK QKYLDDLRSQ LNQLNTENRE  60
LENQLRYVMH HCQGANMEND RLRVENQILH EKLMSLRQAL VLRQIQQSST CATWSCVNST  120
VVTVHQNPSM LRDHVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12139QKKRKKSNPESARRSRMKK
22226KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712028.13e-97basic leucine zipper 4-like
TrEMBLM4ESR57e-96M4ESR5_BRARP; Uncharacterized protein
STRINGBra031845.1-P1e-96(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.12e-28basic leucine-zipper 5