PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130740.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 280aa    MW: 30853.8 Da    PI: 5.7274
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-134589147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r++WT+ E++++++a +++  + Wk+I   +g  +t  q++s+ qky
   XP_009130740.1 45 RQSWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 89
                     899*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-163995IPR009057Homeodomain-like
PROSITE profilePS5129415.0674094IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-64295IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-184392IPR006447Myb domain, plants
SMARTSM007177.8E-104492IPR001005SANT/Myb domain
PfamPF002491.2E-104589IPR001005SANT/Myb domain
CDDcd001671.21E-74790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTSSLSSNPV VSEERPAETS TDLTETTTEA PEKKVRKAYT ISKSRQSWTE GEHDKFLEAL  60
QLFDRDWKKI EDFVGSKTVI QIRSHAQKYF LKVEKNGTFA HVPPPRPKRK AAHPYPQKAA  120
KSAQMSLHVS MSFPPEISNL SGYGSWDDDT SALLSIAVSE VILPKDEIDT LCGGEVVIEL  180
NGSTSAVSPS ASGIGSSSRT LPDSEGLTPV NQAPSMQGLP DFAEVYNFIG SVFDPDSKGR  240
MKKLKEMDPI NFETVLLLMR NLTVNMSNPD FEPSRKVQNT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.171470.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526240.0AK352624.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130740.10.0PREDICTED: protein REVEILLE 4-like isoform X2
SwissprotQ6R0G41e-160RVE4_ARATH; Protein REVEILLE 4
TrEMBLM4CNG30.0M4CNG3_BRARP; Uncharacterized protein
STRINGBra005751.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02840.31e-134LHY/CCA1-like 1
Publications ? help Back to Top
  1. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]