PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130781.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 217aa    MW: 25072.4 Da    PI: 9.2331
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-1877130356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ ++t+ ql  Le+ F+ + +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  XP_009130781.1  77 KKKRLTSGQLASLERSFQDEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWK 130
                     45679************************************************9 PP
2HD-ZIP_I/II115.62.9e-3777167292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+rl++ q+++LE+sF+ e kL+++rK +l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd + +e+++L++ev++Lr+ l+
  XP_009130781.1  77 KKKRLTSGQLASLERSFQDEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRKEYDVVCREKQMLHEEVKKLRAILR 167
                     9*****************999******************************************************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1865134IPR009057Homeodomain-like
PROSITE profilePS5007116.55272132IPR001356Homeobox domain
SMARTSM003896.8E-1676136IPR001356Homeobox domain
CDDcd000861.15E-1477133No hitNo description
PfamPF000467.4E-1677130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-1979139IPR009057Homeodomain-like
PRINTSPR000315.1E-5103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000315.1E-5112128IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEWSTTNNLE NMRVAFMLPT WPESSSFNSL HNFNYDPYAG NSYTPADTQT GPVISVPEPD  60
KIINAYRLPS NNNEITKKKR LTSGQLASLE RSFQDEIKLD SDRKLKLSRE LGLQPRQIAV  120
WFQNRRARWK AKQLEQLYDS LRKEYDVVCR EKQMLHEEVK KLRAILRDHG LIKKQISGVT  180
SGEDTTEIPS VVTTKVYGTD QYNNQMVVAS SCWPPYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKAKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325220.0AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130781.11e-163PREDICTED: putative homeobox-leucine zipper protein ATHB-51 isoform X2
SwissprotQ9LZR01e-126ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0D3AZM11e-155A0A0D3AZM1_BRAOL; Uncharacterized protein
STRINGBo3g002560.11e-155(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-129homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]