PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130860.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 251aa MW: 28063.8 Da PI: 9.9973

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.1	1.3e-30	70	123	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl XP_009130860.1 70 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVEGLTRENVASHLQKYRL 123 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.247	67	126	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-20	67	127	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.1E-31	69	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-24	71	123	IPR006447	Myb domain, plants
Pfam	PF00249	8.6E-8	73	122	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MRDDEEEELP SPEELIPLSQ SLITPHLAIA FDLRSTHHRK NGSSGHPLPQ TTPTQANSSA 60 GDEPARTLKR PRLVWTPQLH KRFVDAVAHL GIKNAVPKTI MQLMSVEGLT RENVASHLQK 120 YRLYLKRMQS GGGNVGESDR LFASSPVPAH FFHPTGRQSS DHFIPSFVPM AATLTHQQFL 180 YRQTPAVNFT SQANNNGKVM EQSLFLARQS QHQPVLIRPS SLHLQSRVAN YAEDLELGAK 240 TVLTLFPTRQ D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	1e-33	70	126	1	57	Transcription factor LUX
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.3610	2e-77	bud\| leaf\| silique

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269\|PubMed:20331973}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130860.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241048	0.0	AC241048.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058I10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130860.1	0.0	PREDICTED: transcription factor LUX-like
Swissprot	O22210	3e-52	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	M4CNP9	0.0	M4CNP9_BRARP; Uncharacterized protein
STRING	Bra005837.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05090.1	1e-95	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]