PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130863.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 182aa    MW: 20501.9 Da    PI: 5.0292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-053254123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC++C+k++s    L  H+++H
  XP_009130863.1 32 YKCNYCPKTYSKGQALGGHQNVH 54
                    9*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.61E-72960No hitNo description
PfamPF139122.4E-63151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-43258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8843259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDPVDMLSSE SSYGSDVSDD GIATELMEQA TYKCNYCPKT YSKGQALGGH QNVHKREREI  60
TKRQERAMLV NMNPPDPYPY PHPFPSQYAL PSGFEQRRYI IDEPDILHVV YNSSQSPYQS  120
VMAQPHTRSL LPASSPICLK LCLGVGSSSQ DQTQTKEPND ATREMDAEKE DHDLSLYLSL  180
KL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130863.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2410480.0AC241048.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058I10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130863.11e-134PREDICTED: zinc finger protein GIS-like
TrEMBLM4CNQ21e-132M4CNQ2_BRARP; Uncharacterized protein
STRINGBra005840.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.16e-38C2H2 family protein