PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130908.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 196aa    MW: 21980 Da    PI: 9.274
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-065375123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ Cg+ F++   L  H+++H
  XP_009130908.1 53 YTCSFCGREFKSAQALGGHMNVH 75
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.35E-75079No hitNo description
Gene3DG3DSA:3.30.160.601.4E-45177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1545380IPR007087Zinc finger, C2H2
PfamPF139121.1E-65376IPR007087Zinc finger, C2H2
SMARTSM003550.00115375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MRSYSCQMER DKCLMSMKFR PVVTRQSSNA ALLWPFGEEY GGGGGCMWPP RSYTCSFCGR  60
EFKSAQALGG HMNVHRRDRA RLKQQSLSSS STDQTTPLDY DHQQHEVLDV GPKFPVQEDS  120
RKPNGSKREI SDVVSSEFDP RRKQLINGVL ASKKAKTDVS RLPMMVGLVI GVSKINGHHE  180
ELDLELRLGA DPPKVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-134875229superman protein
2l1o_A6e-134875229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not expressed in the inflorescence meristem or in the flowers at stages 1 and 2. First expressed in the precursor cells of petal primordia in stage 3 flowers and in the developing petal primordia up to stage 6. Not expressed at later stages. {ECO:0000269|PubMed:14681191}.
UniprotTISSUE SPECIFICITY: Strongly expressed in inflorescences and flowers, and weakly in siliques, seedlings and roots. In flowers, it is expressed in petal primordia and their precursor cells. Also expressed in the lateral root caps and the basal cells of lateral roots. {ECO:0000269|PubMed:14681191}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130908.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627963.11e-121PREDICTED: probable transcriptional regulator RABBIT EARS
RefseqXP_013678515.11e-121probable transcriptional regulator RABBIT EARS
RefseqXP_013682863.11e-121probable transcriptional regulator RABBIT EARS
RefseqXP_013682864.11e-121probable transcriptional regulator RABBIT EARS
SwissprotQ9LHS91e-101RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBLA0A397ZSR71e-118A0A397ZSR7_BRACM; Uncharacterized protein
STRINGBo3g003640.11e-116(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-86C2H2 family protein
Publications ? help Back to Top
  1. Li J, et al.
    RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
    J. Exp. Bot., 2016. 67(22): p. 6473-6480
    [PMID:27838638]