PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130962.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 372aa    MW: 42019.9 Da    PI: 7.1923
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.54.8e-31192246155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LH++F+e+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  XP_009130962.1 192 KTRIRWTQDLHDKFLECVNRLGGANKATPKAILKLMDSDGLTIFHVKSHLQKYRI 246
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.531189249IPR017930Myb domain
SuperFamilySSF466893.76E-17189246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-27191247IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23192247IPR006447Myb domain, plants
PfamPF002492.9E-8196245IPR001005SANT/Myb domain
PfamPF143796.2E-20276323IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDNNFESSNA SQGSRLQLHP QPPQPFNLQD VDTIHYSQTS PWTTETFSGF TPYDCIANQS  60
FSLQCSSSKP YPPSLHSYDH QSSDPPSLDQ SQSMVPMQPS PDQYLKPLYK RSCVNDFAAT  120
NASSASYSLC FGASQDPQEI CRGNYSNSNV TQLSFSLSHH QSKQTHSRFS SPSFSTYGGS  180
MVRNYGTVTG NKTRIRWTQD LHDKFLECVN RLGGANKATP KAILKLMDSD GLTIFHVKSH  240
LQKYRIAKYI PDPREGKFEK RSCSKELSQL DTKTGVQIKE ALQLQLDVQR HLHEQLEIQR  300
NLQVRIEEQG KQLELMIEQQ QKTKESLLKS PNAEVSLPLS AFDHSPPPFS LQDAEAMMLP  360
SYEDTHFQSK IS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-21192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-21192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-21192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-21192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-21192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-21192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-21192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-21192249259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130962.10.0PREDICTED: myb family transcription factor PHL5-like
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLM4CNX40.0M4CNX4_BRARP; Uncharacterized protein
STRINGBra005912.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.10.0G2-like family protein