PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131043.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 153aa    MW: 17210.3 Da    PI: 4.4921
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB59.58e-191195391
           NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91
                    ++d+ lP a +++i+k    +n ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l  l  lGf +y e++ +  +++r
  XP_009131043.1 11 KEDASLPKATMTKIIK----ENVRVARDAQDLLIECCVEFINLISSESNEVCNKENKRTIAPEHVLKELQVLGFGEYGEEVYAAYEQHR 95
                    5677788877666665....6889*****************************************************999876544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-328136IPR009072Histone-fold
SuperFamilySSF471131.09E-2912137IPR009072Histone-fold
PfamPF008087.0E-191473IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKENVR VARDAQDLLI ECCVEFINLI SSESNEVCNK  60
ENKRTIAPEH VLKELQVLGF GEYGEEVYAA YEQHRYETIQ DSQRSVKMNT GAYMTEEEAA  120
AEQQRMFAEA RARMNGGVSA PQQLDTQQSS LQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-311213112133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.238490.0flower| root| silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2410041e-86AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131044.11e-111PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_009131045.11e-111PREDICTED: protein Dr1 homolog isoform X1
SwissprotP495921e-92NC2B_ARATH; Protein Dr1 homolog
TrEMBLM4CP381e-110M4CP38_BRARP; Uncharacterized protein
STRINGBra005976.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38282660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-82nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]