PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131052.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 202aa    MW: 22316.5 Da    PI: 6.3929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-054668123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_009131052.1 46 YTCNFCRREFRSAQALGGHMNVH 68
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-64373No hitNo description
Gene3DG3DSA:3.30.160.608.9E-44470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00734668IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-54669IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1984673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MHGGAWMWNH SKNEELEDDD ESWEVKAFEQ DTKGNIYGTT WPPRSYTCNF CRREFRSAQA  60
LGGHMNVHRR DRASKAHQGP AVRSGGGSGG GRTTFLSSCV PPSTTLIIQS TASNSEGFSH  120
FNQLQNPNGM FGNSSDMVNF YGTTPFPSSN LEFSLLNSSV EVPPRLIQYP TGDDEKAGSM  180
KETTRTSVNE PDLELRLGHK PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-134168229superman protein
2l1o_A3e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.255300.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131052.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834920.0AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018512318.11e-151PREDICTED: probable transcriptional regulator RABBIT EARS
RefseqXP_018512322.11e-151PREDICTED: probable transcriptional regulator RABBIT EARS
RefseqXP_018512327.11e-151PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A398AJY21e-150A0A398AJY2_BRACM; Uncharacterized protein
TrEMBLM4D9U71e-150M4D9U7_BRARP; Uncharacterized protein
STRINGBra013257.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-98C2H2 family protein