PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131144.1
Common Name117M18_12
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 420aa    MW: 48380.6 Da    PI: 5.0984
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3391.51.2e-119243131290
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     ++lk+rmwkd++l+++lk++k+++    ++ ++    +++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+p+kgkp +g+sdsLr+WW
  XP_009131144.1  24 DDLKRRMWKDRNLMEKLKQQKRHSN---DV-VSL--ASHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPDKGKPITGSSDSLRRWW 112
                     79********************964...44.333..4589******************************************************* PP

                     XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT CS
            EIN3  96 kekvefdrngpaaisky.qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskd 189
                     ke v+fd+++p+a+s+y     ++++ ++  + e+ss  h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWPtG+elwwge+g +++
  XP_009131144.1 113 KETVQFDQTAPNAVSDYlTI--AAAAAAEMIEKEPSSLLHMLQELQDTTLGSLLSALMQHCVPPQRRFPLEKGIAPPWWPTGTELWWGEQGEAHE 205
                     *****************533..333344455668************************************************************* PP

                     --.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX.....XXXX.XXXXXXX CS
            EIN3 190 qgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss.....slrk.qspkvtl 276
                     +g ppy+kphdl+k wkvsvL+avikhmsp++ ++r+l+ qsk+lqdkm+ake++++++vlnqee++++ ++ +  s      s +k +++  ++
  XP_009131144.1 206 HGVPPYRKPHDLRKSWKVSVLAAVIKHMSPDLGRVRRLATQSKCLQDKMMAKETDTWSRVLNQEEALLN-IKDRkiSDqdqeaSGSKtKRKCDFM 299
                     *****************************************************************9874.3222121122222111212222222 PP

                     XXXXXXXXXXXXXX CS
            EIN3 277 sceqkedvegkkes 290
                     + ++  ++++++e+
  XP_009131144.1 300 EPSKRPRSDVTQEP 313
                     22222233333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.3E-11724270No hitNo description
Gene3DG3DSA:1.10.3180.101.6E-67146274IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.48E-59149273IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVEVEELEPL TPVEEEEEEV ISYDDLKRRM WKDRNLMEKL KQQKRHSNDV VSLASHRAEA  60
SRRKKMARSQ DSVLKYMMKI MEVCKAKGFV YGIVPDKGKP ITGSSDSLRR WWKETVQFDQ  120
TAPNAVSDYL TIAAAAAAEM IEKEPSSLLH MLQELQDTTL GSLLSALMQH CVPPQRRFPL  180
EKGIAPPWWP TGTELWWGEQ GEAHEHGVPP YRKPHDLRKS WKVSVLAAVI KHMSPDLGRV  240
RRLATQSKCL QDKMMAKETD TWSRVLNQEE ALLNIKDRKI SDQDQEASGS KTKRKCDFME  300
PSKRPRSDVT QEPRQITGDM ISMLVTSPSI GTNTTSEDDY SVSSSAMGKP DDYDSNWMDY  360
LWFERMQPEF NSSRRFDDDE DNPMVLNQST ESNQSDNVSQ SIFSVWDMGC EDKDIYMFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-581502724126Protein ETHYLENE INSENSITIVE 3
4zds_B3e-581502724126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131144.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553420.0AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131144.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX160.0EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A3P5ZK850.0A0A3P5ZK85_BRACM; Uncharacterized protein
STRINGBo2g009710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]