PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131374.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 208aa    MW: 23824.2 Da    PI: 10.1903
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.71e-31151411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 
                     lp+G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   +++e++ yfF+k++++ ++ ++r + +  +gyWk   k++++++
  XP_009131374.1  15 LPVGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDVFFSHPLTFPG--DQKERQRYFFCKKRQEVSSnDHRIKISSGNGYWKPIRKERDITA 106
                     799*************************99.88***************4..4577899*****99988751666666899*************** PP

             NAM  95 kkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       g++vg+++tLvf   ++++++++kt+W+m ey l
  XP_009131374.1 107 -CGRTVGIRRTLVFRgtNNSSSSSNKTRWCMTEYCL 141
                     .99***********96556778889*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-399161IPR003441NAC domain
PROSITE profilePS5100535.87315161IPR003441NAC domain
PfamPF023656.3E-2016141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEVEKSIMVN GGMKLPVGYR FHPTEQELIL HYLLPKAFAS PLPSSIIPVF DVFFSHPLTF  60
PGDQKERQRY FFCKKRQEVS SNDHRIKISS GNGYWKPIRK ERDITACGRT VGIRRTLVFR  120
GTNNSSSSSN KTRWCMTEYC LAGFSSTKVF GEWAVYKVYK RKEPKGRRQR KPRVRDAEEE  180
EFTIGSNHEF GPPPPSPPTS ADESGSII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-191316213169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131374.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131374.11e-154PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A397ZSA91e-153A0A397ZSA9_BRACM; Uncharacterized protein
TrEMBLM4CPU01e-153M4CPU0_BRARP; Uncharacterized protein
STRINGBra006229.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-109NAC domain containing protein 84