PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131375.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 167aa    MW: 18643.8 Da    PI: 8.3581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.9e-054668123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C++ F ++  L  H++ H
  XP_009131375.1 46 FPCQYCPRKFYTSQALGGHQNAH 68
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-64473No hitNo description
PROSITE profilePS5015711.0534673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAEPPPSSFH HHFMCPPPPP KHHRSSNKKH YSFPGSHHPP SIHRLFPCQY CPRKFYTSQA  60
LGGHQNAHKR ERAAARRNLG VDHHHPPPPS SILHDEAAFA CPNFYPNQPP QGSVTATGRS  120
GSTWIVPDNQ QTTTMVGGGG VGYVDPYPYP FGYYIEDEPQ LDLSLHL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: First expressed in developing carpel primordia, and later in stamens and ovules of flower buds. {ECO:0000269|PubMed:15240552}.
Functional Description ? help Back to Top
Source Description
UniProtMay function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium. {ECO:0000269|PubMed:15240552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895641e-50AC189564.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131375.11e-121PREDICTED: zinc finger protein KNUCKLES-like
SwissprotQ9FFX43e-29KNU_ARATH; Zinc finger protein KNUCKLES
TrEMBLA0A397ZZZ51e-116A0A397ZZZ5_BRACM; Uncharacterized protein
STRINGBra006230.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69662031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.13e-25C2H2 family protein
Publications ? help Back to Top
  1. Sun B, et al.
    Timing mechanism dependent on cell division is invoked by Polycomb eviction in plant stem cells.
    Science, 2014. 343(6170): p. 1248559
    [PMID:24482483]
  2. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]