PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131505.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 179aa    MW: 20245.8 Da    PI: 10.1551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-163582455
             AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + Vr ++ +gr++AeIrdp++   ++r++lg+f+t eeAa+a++  +++++g
  XP_009131505.1 35 RVVRKRP-WGRYAAEIRDPVK---KTRVWLGTFDTGEEAARAYDTTAREFHG 82
                    679*999.**********654...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-253289No hitNo description
PROSITE profilePS5103220.63390IPR001471AP2/ERF domain
SMARTSM003802.1E-263396IPR001471AP2/ERF domain
PRINTSPR003672.1E-83445IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-263590IPR001471AP2/ERF domain
PfamPF008471.2E-93781IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-193790IPR016177DNA-binding domain
PRINTSPR003672.1E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVSTDYSLLS THNSTTSFQE RWQLPRYGLP SSSQRVVRKR PWGRYAAEIR DPVKKTRVWL  60
GTFDTGEEAA RAYDTTAREF HGFKAKTNFS LPGESPTSDG SIGRSEMTTR RIEMVGRFPF  120
AWHRQNNVSS GLPPNVAGFF FDPSRAAALR VELSQVYPVQ FDPVNIELSI GIPETVKEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-152889971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131505.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325540.0AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131505.11e-131PREDICTED: ethylene-responsive transcription factor 9-like isoform X2
SwissprotQ9FE671e-62ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLM4CQ361e-128M4CQ36_BRARP; Uncharacterized protein
STRINGBra006325.1-P1e-129(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-65erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]