PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131712.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 787aa    MW: 90585.8 Da    PI: 8.195
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.72.2e-1954128189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn YA ++GF+ r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  XP_009131712.1  54 EYYNVYAARTGFKARTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 128
                     69**************************************876..............589***************************98 PP
2FAR166.85.6e-21222298191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA+ vGF+vr+ +  +sk +++it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l+++HnH+l p
  XP_009131712.1 222 QFYQAYAEVVGFRVRIGQLFRSKVDNSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 298
                     6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-1554128IPR004330FAR1 DNA binding domain
PfamPF031011.8E-16222298IPR004330FAR1 DNA binding domain
PfamPF105514.6E-25399490IPR018289MULE transposase domain
PROSITE profilePS5096610.361673709IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-8684711IPR006564Zinc finger, PMZ-type
PfamPF044342.1E-7684706IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MESSATEHSG FNTMVTKAYP LRILNHNTEE HNNSGGGAEP YVGLEFDTAE EAREYYNVYA  60
ARTGFKARTG QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CTAFIRVQRR DTGKWVLDQI  120
QKEHNHELGG EAEETTTTTT PRPVRAPAPT KLATTVNQHR PKMKVVDESD REQRSSSKSS  180
LKRFKSCSVG EGEVSNDHHS KAVSGSEPYA GLEFASANEA CQFYQAYAEV VGFRVRIGQL  240
FRSKVDNSIT SRRFVCSREG FQHPSRMGCG AYMRIKRQDS GGWIVDRLNK DHNHDLEPGK  300
KNQDGLKKIT DDVTGGLDSV ELIELNNNNN KHIKKATSRE NRIGKEWYPL LLDYFQSKQT  360
EDMGFFYAVE LDVHSGSCLS LFWADSRARF ACSQFGDAVV FDTSYRKGSY SVPFATFVGF  420
NHHRQPVLLG CAMVADESKD SFVWLFQTWL RAMSGRPPRS VVADQDSSIQ QALSQVFPGA  480
HRRYSAWQMR EKERENLRPF PSEFKYEYEK CIYQSQTVVE FDSVWNSLIN KYGLRDDVWL  540
REIYERREHW APAYLRASFF AGIPINGAFE PFFGPSLDAL TPLREFIGRY EQGLEQRREE  600
ERKEDFNSYN LQPFLQTKEP VEEQCRRLYT LTVFRIFQNE LVQSYSYLCL KTYEEGAMSR  660
FLVRKCGNES EKHAVTFNAT NLNSSCSCQM FEHEGLLCRH VLKVFNLLEV KELPSKYILH  720
RWTKNAEFGF VRDMESGVSS QDLKALMVWS LREAASKYIE FGTSSLEKYK LAYEIMREGG  780
KKLCWQR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131712.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891970.0AC189197.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004L02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131712.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A3P5ZR340.0A0A3P5ZR34_BRACM; Uncharacterized protein
STRINGBo3g013440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.10.0FAR1-related sequence 12
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]