PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131743.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 304aa    MW: 34582.6 Da    PI: 4.7617
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131743.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18108158255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  XP_009131743.1 108 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFHTAEEAAMAYDKAAVRIRG 158
                     8********.**********44465..**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-28107167IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-20108168IPR016177DNA-binding domain
SMARTSM003804.3E-35108173IPR001471AP2/ERF domain
CDDcd000185.33E-28108167No hitNo description
PfamPF008478.6E-12108158IPR001471AP2/ERF domain
PROSITE profilePS5103222.576108167IPR001471AP2/ERF domain
PRINTSPR003671.3E-10109120IPR001471AP2/ERF domain
PRINTSPR003671.3E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAFGNIQEPD GEILKNVWEN FIRKPETDTR SVHVQEVSTT WEALPTLDDI SKESKGSLPT  60
IDMSMEAKEW AEILDSIASF PSETNHEPLT NPTGSRSLPS SVSCKTRKYR GVRRRPWGKF  120
AAEIRDSTRN GVRVWLGTFH TAEEAAMAYD KAAVRIRGVQ RAHTNFQLET VIKAMEMDCG  180
SSYYPINRSS TSQPLRNHCE IGKYAIRAYD DKVVDGVVDN SCALSYCSTQ EISFDICGLV  240
GNEEAWLGSR KRQRRDEDCI TFQEVETDDD KKMARREEEK CDMFGLFEFE EFGSDYLDTL  300
LSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-24105168264ATERF1
3gcc_A4e-24105168264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131743.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131743.10.0PREDICTED: ethylene-responsive transcription factor ERF091
SwissprotO495151e-146ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLM4DA000.0M4DA00_BRARP; Uncharacterized protein
STRINGBra013310.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-138ERF family protein