PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009131870.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 392aa MW: 44321.6 Da PI: 5.2337

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009131870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.5	2.7e-49	74	199	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF++r kky++g++++r+tk gyWkatgk+++v+s XP_009131870.1 74 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSDTEWFFFCPRGKKYPHGSQNRRTTKMGYWKATGKERDVKS- 166 69**********************999.99***********778888999**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e+vg+k+tLvf+ grapkge+t+W+mhey++ XP_009131870.1 167 SSEVVGTKRTLVFHIGRAPKGERTEWIMHEYSM 199 999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-54	69	215	IPR003441	NAC domain
PROSITE profile	PS51005	52.473	73	216	IPR003441	NAC domain
Pfam	PF02365	2.8E-25	75	198	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MPAQHLVKNP CLQMSSLIKA QVREHRDSPE TRNPFVLFPG RRYSLVATVV YAGTFMEVDP 60 VGVSVDTVEA STVFPGFKFS PTDVELISYY LKRKMDGLER SVEVIPETDI YNFEPWDLPD 120 KSIVKSDTEW FFFCPRGKKY PHGSQNRRTT KMGYWKATGK ERDVKSSSEV VGTKRTLVFH 180 IGRAPKGERT EWIMHEYSMK GSPLDDALVV CRLRRNREFH KAPEPNLAAD KHMILPNDPA 240 SSGRPSDWDS MIDFYLAGEP GENLLTEMAE TSRNVQVHAD EDFFADILSD EIINLDEAVT 300 TGKTPNEVPT LESAASAIRV LPLPTMIDKQ MVSLLEERQP QEKEGKESSC TEPLSSCFVG 360 LYSIKTVNRV RWDVIIGAVA LIAMLFYLEE AM

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MPAQHLVKNP CLQMSSLIKA QVREHRDSPE TRNPFVLFPG RRYSLVATVV YAGTFMEVDP  60
VGVSVDTVEA STVFPGFKFS PTDVELISYY LKRKMDGLER SVEVIPETDI YNFEPWDLPD  120
KSIVKSDTEW FFFCPRGKKY PHGSQNRRTT KMGYWKATGK ERDVKSSSEV VGTKRTLVFH  180
IGRAPKGERT EWIMHEYSMK GSPLDDALVV CRLRRNREFH KAPEPNLAAD KHMILPNDPA  240
SSGRPSDWDS MIDFYLAGEP GENLLTEMAE TSRNVQVHAD EDFFADILSD EIINLDEAVT  300
TGKTPNEVPT LESAASAIRV LPLPTMIDKQ MVSLLEERQP QEKEGKESSC TEPLSSCFVG  360
LYSIKTVNRV RWDVIIGAVA LIAMLFYLEE AM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-42	65	217	9	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-42	65	217	9	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-42	65	217	9	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-42	65	217	9	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-42	65	217	12	169	NAC domain-containing protein 19
3swm_B	1e-42	65	217	12	169	NAC domain-containing protein 19
3swm_C	1e-42	65	217	12	169	NAC domain-containing protein 19
3swm_D	1e-42	65	217	12	169	NAC domain-containing protein 19
3swp_A	1e-42	65	217	12	169	NAC domain-containing protein 19
3swp_B	1e-42	65	217	12	169	NAC domain-containing protein 19
3swp_C	1e-42	65	217	12	169	NAC domain-containing protein 19
3swp_D	1e-42	65	217	12	169	NAC domain-containing protein 19
4dul_A	1e-42	65	217	9	166	NAC domain-containing protein 19
4dul_B	1e-42	65	217	9	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.31468	1e-171	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in plant cell division. {ECO:0000269\|PubMed:16803883}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009131870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974764	1e-175	KF974764.1 Brassica napus NAC transcription factor 89-1 (NAC89-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009131870.1	0.0	PREDICTED: NAC domain-containing protein 89-like
Swissprot	Q94F58	0.0	NAC89_ARATH; NAC domain-containing protein 89
TrEMBL	M4CQX8	0.0	M4CQX8_BRARP; Uncharacterized protein
STRING	Bra006619.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4309	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	0.0	NAC domain containing protein 89

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]