PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009131877.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 235aa MW: 26373.5 Da PI: 5.1996

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009131877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.2	2.7e-39	6	136	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + GfrF Pt++elv +yL++++eg++ ++++vi+ +d+++veP++Lp +++++ ++w+fF++r++++a+g ++r+t sg Wkatg+ + XP_009131877.1 6 TTGFRFYPTEDELVEFYLRNQLEGRSgDSMHRVIPVLDVFEVEPSHLPDlageRCRGDAEQWFFFVPRQEREARGGGPSRTTGSGHWKATGSPGP 100 68*********************96667778**********9546666667888******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +sk+++ +g+kkt+vfy+grap+g kt+W m+ey+ XP_009131877.1 101 AFSKDNRMIGVKKTMVFYTGRAPTGGKTKWKMNEYK 136 *********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-44	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	44.551	5	162	IPR003441	NAC domain
Pfam	PF02365	2.7E-22	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MEEDLTTGFR FYPTEDELVE FYLRNQLEGR SGDSMHRVIP VLDVFEVEPS HLPDLAGERC 60 RGDAEQWFFF VPRQEREARG GGPSRTTGSG HWKATGSPGP AFSKDNRMIG VKKTMVFYTG 120 RAPTGGKTKW KMNEYKALDD RGNVSAIPKL RHEFSLCRVY VTSGSSRAFD RRPVGVRQTG 180 TMLTNDVAVA ETSFTVGTSP EISMSGGEHV DLSVDTEMVD GLTEPIWEWE QLNWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-28	5	167	20	173	NAC domain-containing protein 19
3swm_B	1e-28	5	167	20	173	NAC domain-containing protein 19
3swm_C	1e-28	5	167	20	173	NAC domain-containing protein 19
3swm_D	1e-28	5	167	20	173	NAC domain-containing protein 19
3swp_A	1e-28	5	167	20	173	NAC domain-containing protein 19
3swp_B	1e-28	5	167	20	173	NAC domain-containing protein 19
3swp_C	1e-28	5	167	20	173	NAC domain-containing protein 19
3swp_D	1e-28	5	167	20	173	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.9533	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009131877.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009131877.1	1e-175	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-141	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M4CQY3	1e-173	M4CQY3_BRARP; Uncharacterized protein
STRING	Bra006624.1-P	1e-174	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-133	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]