PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131913.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 182aa    MW: 20542.4 Da    PI: 9.5821
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.93.2e-30358458
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                    + Y+eClkN+A+s Gg+a+DGCgEfmp++++  +++ +l C ACgCHRnFHRr+++
  XP_009131913.1  3 FLYNECLKNQAVSFGGYALDGCGEFMPKSTTIlTDPPSLSCDACGCHRNFHRRDPS 58
                    68**************************99999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-25161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.3E-25456IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.816556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.8E-30556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.5E-2497165IPR009057Homeodomain-like
SuperFamilySSF466894.22E-1698165IPR009057Homeodomain-like
TIGRFAMsTIGR015656.2E-27108165IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGFLYNECLK NQAVSFGGYA LDGCGEFMPK STTILTDPPS LSCDACGCHR NFHRRDPSNV  60
FIHRTNSTPP PPPLQPVAST QHLLLSLSGS GFSGPSDQDM GKISTVDRKR KRTKFTVKQK  120
VMMRAFAERA GWKINGCDDE YVREFCREVG VEREVLKVWI HNNKYFANGR NRNTTSSMFQ  180
KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-191081651774ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131913.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114833e-51AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9.
GenBankCP0026883e-51CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131913.11e-137PREDICTED: zinc-finger homeodomain protein 12
SwissprotQ9FKJ91e-86ZHD12_ARATH; Zinc-finger homeodomain protein 12
TrEMBLA0A397ZUP01e-135A0A397ZUP0_BRACM; Uncharacterized protein
TrEMBLM4CR161e-135M4CR16_BRARP; Uncharacterized protein
STRINGBra006657.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.13e-79homeobox protein 26