PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132521.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 320aa    MW: 35036.4 Da    PI: 9.2082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132521.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.8e-1258102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_009132521.1  58 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 102
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.68E-1652108IPR009057Homeodomain-like
PROSITE profilePS5129413.75853107IPR017930Myb domain
TIGRFAMsTIGR015572.3E-1856105IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.4E-656108IPR009057Homeodomain-like
SMARTSM007179.6E-1057105IPR001005SANT/Myb domain
PfamPF002496.2E-1058102IPR001005SANT/Myb domain
CDDcd001671.34E-760103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVSRNPNPAD GSFLDPNAMT VVPAIGPFAA VAEAAETVSS GEDLSKKIRK PYTITKSRES  60
WTEPEHDKFL EALQLFDRDW KKIEAFIGSK TVIQIRSHAQ KYFLKVQKSG TGEHLPPPRP  120
KRKAAHPYPQ KAHKNAQPQV PGSFKSAAPE PIDPSSYMFR PESSSMLMTS PTTPAAPAAP  180
WTNNVQTISF TPLPKGAGAN NNCSSSSENT PKPRSNRDTT EQANPSHSLR VLPDFAQVYS  240
FIGSVFDPYA SNHLQKLKKM DPIDVETVLL LMRNLSINLS SPDFEDHRRL LSAYDIGSEA  300
ATDPGGGSKT LNKDPPEIST
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132521.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372100.0AJ937210.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like2 (lcl2 gene).
GenBankAY0876900.0AY087690.1 Arabidopsis thaliana clone 37702 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132521.10.0PREDICTED: protein REVEILLE 6-like isoform X4
RefseqXP_013733913.10.0protein REVEILLE 6 isoform X4
SwissprotQ8H0W31e-180RVE6_ARATH; Protein REVEILLE 6
TrEMBLM4EJZ40.0M4EJZ4_BRARP; Uncharacterized protein
STRINGBra029111.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-149MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]