PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132523.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 199aa    MW: 22939.9 Da    PI: 8.4919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +l ++v+ +G g+W+ I+r+ g++R +k+c++rw +yl
   XP_009132523.1 14 RGLWKPEEDMILRNCVESHGEGNWADISRRSGLKRGGKSCRLRWKNYL 61
                     788*****************************99************97 PP
2Myb_DNA-binding50.35.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_009132523.1  67 RGGMSPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112
                      6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-21864IPR009057Homeodomain-like
PROSITE profilePS5129417.879961IPR017930Myb domain
SuperFamilySSF466896.24E-2912108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002492.8E-141461IPR001005SANT/Myb domain
CDDcd001672.09E-101761No hitNo description
PROSITE profilePS5129424.58462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2365115IPR009057Homeodomain-like
SMARTSM007172.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1467112IPR001005SANT/Myb domain
CDDcd001675.48E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEKKEEERKS HVRRGLWKPE EDMILRNCVE SHGEGNWADI SRRSGLKRGG KSCRLRWKNY  60
LRPNIKRGGM SPQEQDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKSTSRK  120
QNATESVEAP TDKTVMSTGV RHSHGEQGEG EEGTTNWMEE TNCLAYDDHI GSPLPLISHY  180
TDTLVFDPCF AFMDCFPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141157107B-MYB
1h8a_C2e-221411527127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132523.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132523.11e-149PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF71e-112MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A078J2101e-147A0A078J210_BRANA; BnaA03g12580D protein
TrEMBLA0A397ZUR01e-147A0A397ZUR0_BRACM; Uncharacterized protein
TrEMBLM4EJZ61e-147M4EJZ6_BRARP; Uncharacterized protein
STRINGBra029113.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-110myb domain protein 82