PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132580.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25718 Da    PI: 10.1028
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.6e-291161151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rq+tfskRrng++KKA+ELSvLCda+va i+fs++g+lye+ss
  XP_009132580.1 11 KKIENRTSRQITFSKRRNGLFKKAHELSVLCDAQVAAIVFSQSGRLYEFSS 61
                    68***********************************************96 PP
2K-box59.61.3e-20921731697
           K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +l++e++ + k+i+ L+  qR+l+G++L+s+sl +Lq Le+q+eksl+ iRs+K el+ +q+ +l++ke+el ++ ++Lr++
  XP_009132580.1  92 ELKKEMDIMVKKIDLLEVHQRKLMGQGLGSCSLAQLQGLETQIEKSLRIIRSRKAELYADQLLKLKEKERELLDQRRRLREE 173
                     5789***************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-41362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.875363IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-29525IPR002100Transcription factor, MADS-box
CDDcd002652.17E-42575No hitNo description
SuperFamilySSF554551.31E-32579IPR002100Transcription factor, MADS-box
PfamPF003195.9E-271259IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-292540IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-294061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.26590181IPR002487Transcription factor, K-box
PfamPF014864.1E-2093173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKMVRGKIEI KKIENRTSRQ ITFSKRRNGL FKKAHELSVL CDAQVAAIVF SQSGRLYEFS  60
SSEMEKTIER YVKFSPDYFV PGRPQVELYL LELKKEMDIM VKKIDLLEVH QRKLMGQGLG  120
SCSLAQLQGL ETQIEKSLRI IRSRKAELYA DQLLKLKEKE RELLDQRRRL REEEIRETLV  180
RPMLPVTLHT GKDETGSACR MSKHSSEVET DLFIGFPATR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-19375173MEF2 CHIMERA
6byy_B5e-19375173MEF2 CHIMERA
6byy_C5e-19375173MEF2 CHIMERA
6byy_D5e-19375173MEF2 CHIMERA
6bz1_A5e-19375173MEF2 CHIMERA
6bz1_B5e-19375173MEF2 CHIMERA
6bz1_C5e-19375173MEF2 CHIMERA
6bz1_D5e-19375173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132580.11e-159PREDICTED: MADS-box protein AGL71-like isoform X1
SwissprotQ9LT931e-103AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A397ZUY71e-157A0A397ZUY7_BRACM; Uncharacterized protein
TrEMBLM4EK371e-157M4EK37_BRARP; Uncharacterized protein
STRINGBra029154.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.34e-95AGAMOUS-like 71