PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132897.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 463aa    MW: 51130 Da    PI: 5.4431
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73.1e-114368126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C+ff+rtG+C yG++C+++H+
  XP_009132897.1 43 PGERDCQFFLRTGQCGYGNSCRYNHP 68
                    5789*********************9 PP
2zf-CCCH36.48.9e-1289113327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C ++++tG CkyG++Ck++H++
  XP_009132897.1  89 QPDCEYYLKTGACKYGSTCKYHHPK 113
                     789********************96 PP
3zf-CCCH32.51.4e-10134157326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+++++tG C++G  CkF+H+
  XP_009132897.1 134 EKSCPYYMQTGMCRFGVACKFHHP 157
                     667********************8 PP
4zf-CCCH39.96.9e-13233257327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++Crff+ tGtCkyGd Ck++H++
  XP_009132897.1 233 RAECRFFMNTGTCKYGDDCKYSHPK 257
                     799********************96 PP
5zf-CCCH30.56.2e-10278303126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +f ++G+CkyG++Ck+ H+
  XP_009132897.1 278 PGQPACGNFKAYGFCKYGPNCKYDHP 303
                     57899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-64269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8964270IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-94468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-54670IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-44867IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-686113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.80286114IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-989113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-691114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-492112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6130160IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-5131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798131159IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7133157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4136156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.671230258IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-8231257IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10233257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7233258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-6236257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5276302IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164277305IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7279303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSETQNSTET VRSSDKTEDT LTRMKVNEEN MEQSSPSPYP DRPGERDCQF FLRTGQCGYG  60
NSCRYNHPLS LVPQAVSYHR DELPERIGQP DCEYYLKTGA CKYGSTCKYH HPKDRNGAEP  120
VLFNVLGYPM RQGEKSCPYY MQTGMCRFGV ACKFHHPHPQ NGHSTTTYGM SSFPYTMMSL  180
PPATYGVMPP PQVPYPQAYI PFMFAPPQGW SPYMAGSNPI YNVKTQPDSS SERAECRFFM  240
NTGTCKYGDD CKYSHPKERM LESPPNLSHH IVLLPARPGQ PACGNFKAYG FCKYGPNCKY  300
DHPSSPVSTQ PRSSTPPSRS DSTAISNGDK PGAENNSSEI EKQDEDISDK SEVQESSQLS  360
GSDSTAISNG VKPAADNHSS EVEKHDDSSD KTESQLSGCE STVISNGNKP AAESHSSEIE  420
KQDEDISDKD CDSTALSNGK TDAESSSSEI KKQEDNNASQ RVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132897.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132897.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A397ZWR30.0A0A397ZWR3_BRACM; Uncharacterized protein
TrEMBLM4E2B90.0M4E2B9_BRARP; Uncharacterized protein
STRINGBra022919.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-178zinc finger nuclease 2