PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132950.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 146aa    MW: 17205.1 Da    PI: 10.597
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132950.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind47.54.8e-15151132102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH....HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk....yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkk 91 
                     F k +y +++d++l+ ++sws+n++sf+++d+ ef+++vLp+      +  nf+ F+  L+ YgF +vk ++++        +  h++ F + k 
  XP_009132950.1  15 FYKGVYAVVDDSSLDAVVSWSKNKKSFIIWDPIEFQRRVLPTgrerRIRSLNFSMFMADLKYYGFIRVKGSKHR-------YHIGHPKyFVRCKP 102
                     88899***********************************86555589999******************99988.......55556555677777 PP

                     XXXXXXXXXXX CS
    HSF_DNA-bind  92 ellekikrkks 102
                     el++k++ +++
  XP_009132950.1 103 ELMKKMQEEAH 113
                     77666665544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-1511109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-911111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-1713109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-1615110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MHVPVTVTDY SLSSFYKGVY AVVDDSSLDA VVSWSKNKKS FIIWDPIEFQ RRVLPTGRER  60
RIRSLNFSMF MADLKYYGFI RVKGSKHRYH IGHPKYFVRC KPELMKKMQE EAHEKRMHKF  120
EQDRAMRKKA KARAMKLADA LGDLGL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.187250.0bud| silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411461e-126AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132950.11e-106PREDICTED: heat stress transcription factor A-4a-like
TrEMBLM4E2E91e-104M4E2E9_BRARP; Uncharacterized protein
STRINGBra022949.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1817268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.19e-12Winged helix-turn-helix transcription repressor DNA-binding