PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133023.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 379aa    MW: 40892.4 Da    PI: 6.8987
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_160.24.1e-19273335163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr+rrkq NReAA+rsR+RK+ae ++L++  ++L+aeN +L+ e+++lk + ++l+se+
  XP_009133023.1 273 ERELKRQRRKQTNREAAQRSRLRKEAEFDQLAQYTEVLSAENASLRAEMNRLKSQREELTSEN 335
                     89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.0E-20184IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.5E-28121240No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-15266332No hitNo description
PfamPF001709.6E-17273335IPR004827Basic-leucine zipper domain
SMARTSM003388.7E-16273337IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.587275338IPR004827Basic-leucine zipper domain
CDDcd146913.44E-16275331No hitNo description
SuperFamilySSF579591.31E-9276332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MASSEMEKPS KEKELKQPSS SSSAPPPSQA SPAPMQPHGF VTSSPQPHPY MWGVQHMMPP  60
YGTPPHPYVT MYPPGGMYAH PSMPPGSYPY SPMPSPNGVT EASGNTTGGT EGDSKRSDVK  120
EKLPIRRSKR ILSMMKGKNN EPGKNSGASA NVAYSKSGES DSDGSSEGSD ANYQIDLGSS  180
QDGKDAASEN GGSANGLQNG SVGTPLPTVS QKVPIMSKTA PGVPGQPTNI NIGMGYWGAP  240
IPGMHGKVST PVPGVFAQMS RDGGHSQPWL QDERELKRQR RKQTNREAAQ RSRLRKEAEF  300
DQLAQYTEVL SAENASLRAE MNRLKSQREE LTSENTSLKD LLLSFPPLEG INMDKDDQEP  360
DTNQTCFTET KFVSYKDST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133023.10.0PREDICTED: bZIP transcription factor 16-like isoform X3
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLM4E2L10.0M4E2L1_BRARP; Uncharacterized protein
STRINGBra023012.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-167basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]