PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133039.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 203aa MW: 22593.1 Da PI: 6.5182

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.4	7.3e-18	56	104	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g XP_009133039.1 56 FRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVAALAIKG 104 8**998.******854...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.893	55	112	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.5E-32	55	113	IPR001471	AP2/ERF domain
SMART	SM00380	6.7E-40	55	118	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-11	56	104	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.2E-21	56	113	IPR016177	DNA-binding domain
CDD	cd00018	4.66E-33	56	114	No hit	No description
PRINTS	PR00367	2.4E-10	56	67	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-10	78	94	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MDHSSSSESH LDDYRRRPQA KATARAVNNN KNIKKKRVKE DLDDDEKINV SKHQSFRGVR 60 MRQWGKWVSE IREPKKKSRI WLGTFPTAEM AARAHDVAAL AIKGDSAHLN FPELAYHLPR 120 PASAHPKDIQ AAAAEAAASV VIDMDIETSS PSTGATELSP PAVASTADDA FSDLPDLFLD 180 VNHKNDGFWE SFPYEEPFFS GSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-17	42	112	1	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	36	RRRPQAKATARAVNNNKNIKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133039.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133039.1	1e-148	PREDICTED: ethylene-responsive transcription factor ERF038-like
Refseq	XP_013740513.1	1e-148	ethylene-responsive transcription factor ERF038
Swissprot	Q9ZQP3	5e-82	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	M4E2M5	1e-147	M4E2M5_BRARP; Uncharacterized protein
STRING	Bra023026.1-P	1e-148	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	7e-83	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]