PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133062.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 166aa MW: 19516.9 Da PI: 10.6183

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	58.9	1.4e-18	9	97	6	100
HHHHHCTGGGTTTSEESSSSSEEEES-HHH.HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXXXXX CS HSF_DNA-bind 6 lyeiledeelkeliswsengnsfvvldeee.fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkellekik 98 l+ei++d++l+++isws++++sf++++++e f+kk+L+++F n++ F+ L++YgF +++ ++++ eF hk+ F +gk ell+k++ XP_009133062.1 9 LHEIVDDPSLDSTISWSKSNKSFIIWNPKElFTKKILKRFFC-CNLSQFITELDTYGFVRIEGSDEQ-------LEFGHKQyFVRGKPELLKKMR 95 789*********************9655389999999885.799***************99.......**989*******987 PP XX CS HSF_DNA-bind 99 rk 100 + XP_009133062.1 96 LQ 97 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00056	6.4E-5	5	28	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	8.5E-20	8	92	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.44E-19	9	95	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.5E-20	9	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.9E-18	9	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.4E-5	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MTKLLLLLLH EIVDDPSLDS TISWSKSNKS FIIWNPKELF TKKILKRFFC CNLSQFITEL 60 DTYGFVRIEG SDEQLEFGHK QYFVRGKPEL LKKMRLQAAM NRMKKSAKKA KARAEAEKNG 120 SMTVRREPRI IIDADEVRMR YKQIFESSSS TIAKTPLENR FRHLRI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.3873	0.0	bud\| flower\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133062.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133068.1	1e-114	PREDICTED: heat stress transcription factor A-4a-like
TrEMBL	A0A0D3A4F0	1e-104	A0A0D3A4F0_BRAOL; Uncharacterized protein
STRING	Bo1g021700.1	1e-104	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5067	14	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19630.1	5e-21	HSF family protein