PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133079.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 169aa    MW: 19817.1 Da    PI: 10.5509
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind59.31.1e-1891022101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHH.HHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvldeeefa.kkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkell 94 
                     F + +y++++d++l+++iswse+++sfv++d++e+  kk+L ++F  ++++ F++ L+  gF ++k ++++        eF h++ F +gk el+
  XP_009133079.1   9 FYTGIYKVVDDPSLDSIISWSESNKSFVIWDPKELVeKKILRRFF-RNKLSHFIKDLKSHGFVRIKGSDEH-------LEFGHEQyFVRGKPELM 95 
                     88899**************************99986155666666.5789*******************98.......******989******** PP

                     XXXXXXX CS
    HSF_DNA-bind  95 ekikrkk 101
                      k++rk 
  XP_009133079.1  96 IKLRRKV 102
                     ***9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-255101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-195101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-20796IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-179101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-5932IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-56072IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAWMSLSQFY TGIYKVVDDP SLDSIISWSE SNKSFVIWDP KELVEKKILR RFFRNKLSHF  60
IKDLKSHGFV RIKGSDEHLE FGHEQYFVRG KPELMIKLRR KVAWGRVKKD LKAAKARAKA  120
EAEKKGCVGD QPSYRKMCLE DARIRFDQIM GHSTKAKTPL ENSFRHLQI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133079.11e-123PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A3P5Z3I71e-105A0A3P5Z3I7_BRACM; Uncharacterized protein
TrEMBLM4DA991e-105M4DA99_BRARP; Uncharacterized protein
STRINGBra013409.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.18e-25HSF family protein