PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133094.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31065.8 Da    PI: 7.8134
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-18126180256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q   Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_009133094.1 126 RKKLRLTKQQSALLEDSFKVHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 180
                     788899***********************************************98 PP
2HD-ZIP_I/II122.52e-39126215191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k+q++lLE+sF+ +++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l
  XP_009133094.1 126 RKKLRLTKQQSALLEDSFKVHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-AL 215
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-17114176IPR009057Homeodomain-like
PROSITE profilePS5007116.973122182IPR001356Homeobox domain
SuperFamilySSF466893.42E-18124190IPR009057Homeodomain-like
SMARTSM003895.6E-15124186IPR001356Homeobox domain
CDDcd000861.82E-15126183No hitNo description
PfamPF000463.1E-15126180IPR001356Homeobox domain
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
SMARTSM003402.5E-25182225IPR003106Leucine zipper, homeobox-associated
PfamPF021834.5E-10182216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGLDDSCNTG LVLGLGLSPT PNNYNHTIKK SFTTVEHHFD PSLTLSLSGE SYKTKAVEMT  60
DAGAGDQIFR QTSSHSGVSS FSSGRVKRER EVFSGDGEEE AEETTERVVS SRLSDDHEDE  120
EGASARKKLR LTKQQSALLE DSFKVHSTLN PKQKQVLARQ LNLRPRQVEV WFQNRRARTK  180
LKQTEVDCEF LKKCCETLTD ENRRLQKELQ DLKALKMSQP FYMHIPPATL TMCPSCERLS  240
GGGAGGGGGG TVAVDGETGK GAFSIVTKPR FYSHFTNPSA AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133094.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891830.0AC189183.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001A20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133094.10.0PREDICTED: homeobox-leucine zipper protein HAT22
RefseqXP_013728828.10.0homeobox-leucine zipper protein HAT22
RefseqXP_013733489.10.0homeobox-leucine zipper protein HAT22
RefseqXP_013733565.10.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-156HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A078JM810.0A0A078JM81_BRANA; BnaA01g34550D protein
TrEMBLA0A398AHE50.0A0A398AHE5_BRACM; Uncharacterized protein
TrEMBLM4D5M90.0M4D5M9_BRARP; Uncharacterized protein
STRINGBra011786.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-152HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]