PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133240.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 294aa MW: 34847.2 Da PI: 7.0775

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.3	6.3e-26	44	126	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Li++r e+++++ ++k++k lWe vs+kmr++ f rsp+qCk+kw+nl +r+k +++++ + +++++p++d++e XP_009133240.1 44 QWSLEETKELIAIRGELDQTFMETKRNKLLWEVVSNKMRDKSFLRSPEQCKCKWKNLVTRFKGCETMDAES---ARQQFPFYDDME 126 7******************************************************************84...45689***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0018	41	103	IPR001005	SANT/Myb domain
CDD	cd12203	4.01E-22	43	108	No hit	No description
Pfam	PF13837	4.8E-20	44	126	No hit	No description
PROSITE profile	PS50090	7.538	45	101	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDGHQHQLHH LQYLKKHSHH VHPQSQTPEI ASPATVAAGD RFPQWSLEET KELIAIRGEL 60 DQTFMETKRN KLLWEVVSNK MRDKSFLRSP EQCKCKWKNL VTRFKGCETM DAESARQQFP 120 FYDDMEIIFT SRMQRMIWVE SEGGGGGASG TTRKRSHSEQ FSSDEEEENV NEELVDISND 180 PKIPNPKKNI VKKRKGGISN SNASNSVREV LDEFMRHQMR MENEWIERWE AREKERAERE 240 EEWRGKMEEI EKERVKMERM WRDREDQRRS REEMKAEKRD SLISALLAKL TRDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	2e-13	41	122	3	84	DNA binding protein GT-1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	194	PKKNIVKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269\|PubMed:15310827}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133240.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269\|PubMed:15310827}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF453582	0.0	AF453582.1 Arabidopsis thaliana GT-1 like transcription factor (GT1L) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133240.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
Refseq	XP_013740623.1	0.0	trihelix transcription factor GT-3b-like
Swissprot	O80450	1e-123	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	M4C768	0.0	M4C768_BRARP; Uncharacterized protein
STRING	Bra000046.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-88	Trihelix family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]