PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133422.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 233aa MW: 25843.2 Da PI: 8.2026

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5.1e-13	60	106	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h +E+rRRdriNs ++ Lr+l+P + Kl+Ka+ L ++e +k+L XP_009133422.1 60 RSHRLAEKRRRDRINSHLSALRKLVPDS-----DKLDKAALLASVIEQVKEL 106 68***********************8.....7***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.186	57	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-13	60	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.73E-12	60	109	No hit	No description
Pfam	PF00010	1.0E-10	60	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-14	60	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-12	63	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MENSYDSAAA AKWSDSTSPY NMVSWSLLQP GSSDSDLSRF NLGSSDELVG GNDKAESVSR 60 SHRLAEKRRR DRINSHLSAL RKLVPDSDKL DKAALLASVI EQVKELKQEA KESPIFQDLP 120 TEADEVTILP ETNSNTTIFK ASFCCPDQTE AISEIVSVLT KFKLETIQGE IICVGGRMRI 180 NFILKETATT TSVKALKQSL CAALNRITSL TTSSVCRIRS KRQRWFLSSN YSQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133422.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133422.1	1e-171	PREDICTED: transcription factor bHLH51-like
Swissprot	Q9XEF0	1e-116	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A078EZU5	1e-170	A0A078EZU5_BRANA; BnaA03g18960D protein
TrEMBL	M4C7J9	1e-170	M4C7J9_BRARP; Uncharacterized protein
STRING	Bra000177.1-P	1e-170	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-119	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]