PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133426.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 389aa    MW: 43913.7 Da    PI: 9.5364
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.32.6e-3167120255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+
  XP_009133426.1  67 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 120
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-2963121IPR009057Homeodomain-like
PROSITE profilePS5129413.47563123IPR017930Myb domain
SuperFamilySSF466891.74E-1564121IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-2467122IPR006447Myb domain, plants
PfamPF002494.1E-968119IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MRSSSQSSEN SKKTDNKDEE EDEEERSADQ SPSKNSYLEE NGSHHHNNDQ IKKSGGSVRP  60
YNRSKTPRLR WTPELHICFL QAVERLGGPD RATPKLVLQL MNVKGLSIGH VKSHLQMYRS  120
KKIDDTNQGD QRFSFEHGAG YTYNLRQLPM LQSFDQSPTS LGYGGGSWTG HRQHVYHSPW  180
RGLTARDNTR TRQTLFGSQP GERFHGVSNS ILDDKNSTVW FRINSHEAAH ANNGVGEAVP  240
RMHRSFLEGM KTFNKSWGQS LASNPNSWTA SKPQSHIAAT LSSNQRDNPL VAEKMENVLK  300
KKRLLLSDDC NNSDKDLDLS LSFKVPRSHN NLGDCLLEEE KEHADSKGLS LSLYSSSFAK  360
LGQIIRKEDQ NYHKKRKCSV LASPLDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133426.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133426.10.0PREDICTED: uncharacterized protein LOC103857923
TrEMBLM4C7K20.0M4C7K2_BRARP; Uncharacterized protein
STRINGBra000180.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.10.0G2-like family protein